I'm not there yet, but I was planning on going with the 1/32 microstep (DRV8825??) from pololu with a printer I am in the middle of building. My understanding is that with all the jumpers in place you get the 1/32 microstepping, and it will work fine with Marlin, except that you need to double the steps/mm calibration settings on each axis that is using a new driver. (that is assuming you had previously calibrated with 1/16 microstepping drivers).
I do not believe that the reprap calculator has been modified to allow specification os 1/32 microstepping, but if you enter 1/16, just double the number you get out.